N'oge okpomọkụ nke 2018, a na-enwe ụlọ akwụkwọ okpomọkụ kwa afọ na bioinformatics na nso St.
Isi ihe a na-elekwasị anya n'ụlọ akwụkwọ a bụ nyocha nke ọrịa kansa, mana enwere nkuzi na mpaghara ndị ọzọ nke bioinformatics, sitere na evolushọn ruo nyocha nke data usoro otu cell. N'ime izu, ụmụ okorobịa mụtara otú e si arụ ọrụ na-esote-emana sequencing data, emebere na Python na R, na-eji ọkọlọtọ bioinformatics ngwá ọrụ na frameworks, wee mara na usoro nke usoro bayoloji, mkpụrụ ndụ ihe nketa mkpụrụ ndụ ihe nketa na ọgwụ nlereanya na ọmụmụ nke etuto ahụ. na ọtụtụ ndị ọzọ.
N'okpuru, ị ga-ahụ vidiyo nke okwu ihu ọha 18 e nyere n'ụlọ akwụkwọ ahụ, nke nwere nkọwa dị nkenke na ihe ngosi slide. Ndị akara akara akara "*" bụ ihe ndị bụ isi, enwere ike ilele ha na-enweghị nkwadebe mbụ.
1*. Oncogenomics na oncology ahaziri onwe | Mikhail Pyatnitsky, Research Institute of Biomedical Chemistry
Mikhail kwuru na nkenke banyere genomics nke etuto ahụ na otú ịghọta evolushọn nke mkpụrụ ndụ kansa na-enye anyị ohere dozie nsogbu bara uru nke oncology. Onye nkuzi ahụ lebara anya pụrụ iche n'ịkọwa ọdịiche dị n'etiti oncogenes na oncosuppressors, ụzọ e si achọpụta "genes cancer" na ịchọpụta ụdị subtypes nke etuto ahụ. N'ikpeazụ, Mikhail lebara anya na ọdịnihu nke oncogenomics na nsogbu ndị nwere ike ibili.
2*. Nchọpụta mkpụrụ ndụ ihe nketa nke ọrịa akpụ akpụ | Andrey Afanasiev, y Risk
Andrei kwuru banyere ọrịa akpụ ọrịa eketa wee nyochaa usoro ndu ha, ọrịa na-efe efe na ngosipụta ụlọ ọgwụ. Akụkụ nke nkuzi a na-etinye aka na okwu gbasara nyocha mkpụrụ ndụ ihe nketa - onye kwesịrị ịmalite ya, ihe a na-eme maka nke a, ihe isi ike na-ebilite na nhazi data na ịkọwapụta nsonaazụ, na, n'ikpeazụ, uru ọ na-enye ndị ọrịa na ndị ikwu ha. .
3*. The Pan-Cancer Atlas | German Demidov, BIST/UPF
N'agbanyeghị ọtụtụ iri afọ nke nnyocha na ubi nke genomics na epigenomics nke cancer, azịza nke ajụjụ "otú, ebe na ihe mere tumor syndromes ime" ka na-adịghị zuru ezu. Otu n'ime ihe kpatara nke a bụ mkpa maka inweta na nhazi nke data dị ukwuu iji chọpụta mmetụta nke obere nha, nke siri ike ịchọta na njedebe data (na nke a bụ nha nke na-ahụkarị maka a). ọmụmụ n'ime otu ụlọ nyocha ma ọ bụ karịa), mana nke na-arụkọ ọrụ ọnụ.
N'ime afọ ole na ole gara aga, ọtụtụ n'ime ndị nchọpụta siri ike n'ụwa, n'ịghọta nsogbu a, malitere ịbanye na mgbalị ha na mgbalị iji chọpụta ma kọwaa mmetụta ndị a niile. Herman kwuru maka otu n'ime atụmatụ ndị a (The PanCancer Atlas) na nsonaazụ enwetara dịka akụkụ nke ọrụ nke ụlọ ọrụ ụlọ nyocha a wee bipụta ya na mbipụta pụrụ iche nke Cell na nkuzi a.
4. ChIP-Seq na ọmụmụ nke usoro epigenetic | Oleg Shpynov, JetBrains Research
A na-ahazi okwu mkpụrụ ndụ ihe nketa n'ụzọ dị iche iche. N'okwu nkuzi ya, Oleg kwuru banyere iwu epigenetic site n'ịgbanwe histones, na-amụ usoro ndị a site na iji usoro ChIP-seq, na ụzọ maka nyochaa nsonaazụ ya.
5. Multiomics na nchọpụta ọrịa cancer | Konstantin Okonechnikov, German Cancer Research Center
Mmepe nke teknụzụ nnwale na ihe ndị dị ndụ na-eme ka o kwe omume ijikọta ọmụmụ nke usoro dị iche iche na-arụ ọrụ na sel, akụkụ ahụ, ma ọ bụ ọbụna akụkụ ahụ dum. Iji guzobe njikọ n'etiti akụkụ nke usoro ndu, ọ dị mkpa iji multiomics, nke na-ejikọta nnukwu data nnwale sitere na genomics, transcriptomics, epigenomics, na proteomics. Konstantin nyere ihe atụ atụ nke iji multiomics na ngalaba nyocha ọrịa kansa na-elekwasị anya na oncology ụmụaka.
6. Ntughari na njedebe nke nyocha otu cell | Konstantin Okonechnikov
Okwu nkuzi zuru oke na usoro RNA otu cell na ụzọ maka nyocha data a, yana ụzọ isi merie nsogbu doro anya na nke zoro ezo na ọmụmụ ha.
7. Nyocha nke otu-cell RNA-seq data | Konstantin Zaitsev, Mahadum Washington na St. Louis
Okwu mmalite na usoro otu cell. Konstantin na-atụle usoro usoro, ihe ịma aka na ụlọ nyocha na usoro bioinformatics, yana ụzọ isi merie ha.
8. Nchọpụta nke muscular dystrophy iji nanoscale sequencing | Pavel Avdeev, Mahadum George Washington
Usoro iji teknụzụ Oxford Nanopore nwere uru enwere ike iji chọpụta ihe kpatara ọrịa dị ka dystrophy muscular. N'okwu nkuzi ya, Pavel kwuru banyere mmepe nke pipeline maka ịchọpụta ọrịa a.
9*. Ihe ngosi eserese nke genome | Ilya Minkin, Mahadum steeti Pennsylvania
Ụdị eserese na-enye ohere ngosipụta kọmpat nke ọnụ ọgụgụ buru ibu nke usoro yiri ya ma na-ejikarị ya na genomics. Ilya kwuru n'ụzọ zuru ezu banyere otu esi eji eserese iji weghachi usoro nke genomic, otu na ihe kpatara eji eji eserese de Bruyn, ole ụdị “graph” dị otú ahụ na-abawanye izi ezi nke nchọgharị mgbanwe, yana nsogbu ndị a na-edozibeghị na iji eserese ka dị. .
10*. Proteomics na-atọ ụtọ | Pavel Sinitsyn, Max Planck Institute of Biochemistry (akụkụ 2)
Protein na-ahụ maka ọtụtụ n'ime usoro biochemical dị n'ime ihe dị ndụ, ma ka ọ dị ugbu a, proteomics bụ naanị usoro nyocha zuru ụwa ọnụ nke steeti ọtụtụ puku protein n'otu oge. Ọrụ dị iche iche a ga-edozi dị egwu - site na ịchọpụta ọgwụ mgbochi ọrịa na antigens ruo n'ịchọpụta mpaghara nke ọtụtụ puku protein. N'okwu nkuzi ya, Pavel kwuru banyere ndị a na ngwa ndị ọzọ nke proteomics, mmepe ya ugbu a na ọnyà na nyocha data.
iri na otu*. Ụkpụrụ bụ isi nke simulations molekụla | Pavel Yakovlev, BIOCAD
Okwu mmeghe nke usoro ihe omimi banyere ihe omimi nke molecular: gịnị kpatara o ji dị mkpa, gịnị ka ọ na-eme na otu esi eji ya mee ihe gbasara mmepe ọgwụ. Pavel ṅara ntị na usoro nke ihe omimi nke ihe omimi, nkọwa nke ndị agha molecular, nkọwa nke mmekọrịta, echiche nke "mpaghara ike" na "mmekọrịta", njedebe na ịme ihe ngosi, na ọtụtụ ndị ọzọ.
12*. Usoro ihe ọmụmụ ihe omimi na mkpụrụ ndụ ihe nketa | Yuri Barbitov, Institute of Bioinformatics
Okwu mmeghe nke akụkụ atọ nke usoro ihe ọmụmụ ihe omimi na mkpụrụ ndụ ihe nketa maka ụmụ akwụkwọ gụsịrị akwụkwọ na gụsịrị akwụkwọ na injinia. Okwu nkuzi nke mbụ na-atụle echiche nke bayoloji nke oge a, ajụjụ gbasara nhazi nke genome na ihe omume nke ngbanwe. Nke abụọ na-ekpuchi n'ụzọ zuru ezu okwu gbasara ọrụ mkpụrụ ndụ ihe nketa, usoro nke ederede na ntụgharị, nke atọ na-ekpuchi ụkpụrụ nke usoro mkpụrụ ndụ ihe nketa na usoro ihe ọmụmụ ihe ndị bụ isi.
13*. Ụkpụrụ nke nyocha data NGS | Yuri Barbitov, Institute of Bioinformatics
Nkuzi a na-ekwu maka usoro nke usoro ọgbọ nke abụọ (NGS), ụdị na njirimara ha. Onye nkuzi na-akọwa n'ụzọ zuru ezu ka esi ahazi data mmepụta sitere na sequencer, otu esi agbanwe ya maka nyocha, na olee ụzọ isi rụọ ọrụ na ya.
14*. Iji ahịrị iwu, mee | Gennady Zakharov, EPAM
Ntụle bara uru nke iwu ahịrị iwu Linux bara uru, nhọrọ na isi ihe eji eme ha. A na-eduzi ihe atụ ndị a na nyocha nke usoro DNA nke usoro. Na mgbakwunye na arụmọrụ Linux ọkọlọtọ (dịka ọmụmaatụ, cat, grep, sed, awk), a na-atụle akụrụngwa maka ịrụ ọrụ na usoro (samtools, bedtools).
15*. Nhụta data maka ụmụntakịrị | Nikita Alekseev, Mahadum ITMO
Onye ọ bụla mere iji gosi nsonaazụ nke ọrụ sayensị ha ma ọ bụ ghọta eserese, eserese na foto ndị ọzọ. Nikita gwara otu esi akọwa eserese na eserese n'ụzọ ziri ezi, na-egosipụta isi ihe sitere na ha; esi ise doro anya foto. Onye nkụzi ahụ kwusikwara ike ihe a ga-achọ mgbe ị na-agụ isiokwu ma ọ bụ na-ekiri mkpọsa.
16*. Ọrụ na bioinformatics | Victoria Korzhova, Max Planck Institute of Biochemistry
Victoria kwuru gbasara usoro sayensị agụmakwụkwọ na mba ofesi yana ihe ị kwesịrị ịṅa ntị iji wuo ọrụ na sayensị ma ọ bụ ụlọ ọrụ dị ka nwa akwụkwọ mahadum, gụsịrị akwụkwọ ma ọ bụ postgraduate.
17*. Otu esi ede CV maka onye ọkà mmụta sayensị | Victoria Korzhova, Max Planck Institute of Biochemistry
Kedu ihe ị ga-ahapụ na CV na ihe ị ga-ewepụ? Kedu eziokwu ga-amasị onye isi ụlọ nyocha ahụ, oleekwa nke ka mma ịghara ịkọ? Otu esi ahazi ozi ka mmalite gị wee dọta uche? Okwu nkuzi a ga-enye azịza nye ajụjụ ndị a na ndị ọzọ.
18*. Kedu ka ahịa bioinformatics si arụ ọrụ | Andrey Afanasiev, y Risk
Kedu ka ahịa si arụ ọrụ yana ebe bioinformatics na-arụ ọrụ? Azịza nke ajụjụ a bụ nkọwa zuru ezu, yana ihe atụ na ndụmọdụ, na nkuzi Andrey.
Ọgwụgwụ
Dị ka ị nwere ike ịhụla, nkuzi na ụlọ akwụkwọ ahụ sara mbara nke ukwuu n'ihe gbasara isiokwu - site na nhazi ihe omimi na iji eserese iji kpokọta genome, na nyocha nke otu mkpụrụ ndụ na ịmepụta ọrụ sayensị. Anyị na Institute of Bioinformatics na-agbalị itinye isiokwu dị iche iche na mmemme ụlọ akwụkwọ iji kpuchie ọtụtụ usoro ọmụmụ bioinformatics dị ka o kwere mee, ka onye ọ bụla so na ya mụta ihe ọhụrụ na nke bara uru maka onwe ya.
A ga-enwe ụlọ akwụkwọ bioinformatics na-esote site na July 29 ruo August 3, 2019 na nso Moscow.
Maka ndị chọrọ ịmụ bioinformatics miri emi, anyị na-aga n'ihu na-anabata ngwa maka anyị
Maka ndị na-anọghị na St. Petersburg ma ọ bụ Moscow, ma n'ezie chọrọ ịghọ bioinformatician, anyị kwadebere
Anyị nwekwara ọtụtụ iri
N'afọ 2018, e mere ụlọ akwụkwọ Summerlọ Akwụkwọ Bioinformatics site na nkwado nke ndị mmekọ anyị ogologo oge - JetBrains, BIOCAD na EPAM, nke ọtụtụ ndị na-ekele ha.
Bioinformatics niile!
PS Ọ bụrụ na ọ dị gị ntakịrị,
isi: www.habr.com